課程資訊
課程名稱
化學資訊
CHEMINFORMATICS 
開課學期
98-2 
授課對象
電機資訊學院  資訊工程學研究所  
授課教師
曾宇鳳 
課號
CSIE5730 
課程識別碼
922EU3500 
班次
 
學分
全/半年
半年 
必/選修
選修 
上課時間
星期一2,3,4(9:10~12:10) 
上課地點
 
備註
本課程以英語授課。上課地點:資工系R519
總人數上限:25人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/982Cheminfo 
課程簡介影片
 
核心能力關聯
核心能力與課程規劃關聯圖
課程大綱
為確保您我的權利,請尊重智慧財產權及不得非法影印
課程概述

The new discipline of cheminformatics covers the application of computer-
assisted methods to chemical problems such as information storage and
retrieval, the prediction of physical, chemical or biological properties of
compounds, spectra simulation, structure elucidation, reaction modeling,
synthesis planning and drug design. This class provides an introduction to the
representation of molecular structures and reactions, data types and
databases/data sources, search methods, methods for data analysis as well as
such applications as structure elucidation, reaction simulation, synthesis
planning and drug design.



 

課程目標
* Basic chemistry for cheminformatics, representation of the chemical
structure, chemical nomenclature, elements, and formulas of compounds to
chemical structure fingerprints
* Chemical data, from 2D to 3D structure, structure comparison
* Chemical reactions,
* Calculation of physical chemical properties of compounds,
* Calculation of structure descriptors
* Methods for data analysis, and applications in computer-aided drug design,
spectra analysis, molecular modeling, simulation  
課程要求
Basic chemistry and physics background preferred but not required. Experience
in machine learning, multivariate statistical analysis, and pattern
recognition will be helpful but not required.
 
預期每週課後學習時數
 
Office Hours
 
指定閱讀
Textbook: Cheminformatics, by Johann Gasteiger, Thomas Engel

Publisher: John Wiley & Sons (December 9, 2003) , ISBN-10: 3527306811 
參考書目
Handbook of Chemoinformatics
Johann Gasteiger, WILEY-VCH, 3527306803 
評量方式
(僅供參考)
 
No.
項目
百分比
說明
1. 
Mid Term 
30% 
 
2. 
Final Term 
30% 
 
3. 
Attendance 
20% 
 
4. 
Homework 
20% 
 
 
課程進度
週次
日期
單元主題
第1週
02/22  Introduction 
第2週
03/01  Representation of Chemical Compounds 
第3週
03/08  Chemical Structure File Formats  
第4週
03/15  Characterizing 2D structures  
第5週
03/22  Characterizing 2D structures with descriptors and fingerprints 
第6週
03/29  3D Representation of Chemical Compounds 
第7週
04/05  清明節 
第8週
04/12  Chemical Information Searching 
第9週
04/19  Midterm Exam 
第10週
04/26  Database and Data Source I 
第11週
05/03  Database and Data Source II & Patent Search 
第12週
05/10  Molecular Dynamics Simulation & Gromacs I 
第13週
05/17  Calculation of Physical and Chemical Data & Gromacs II 
第14週
05/24  Computer Aided Molecular Design 
第15週
05/31  Quantitative Structure-Activity Relationship (QSAR) 
第16週
06/07  Computer Aided Drug Design I 
第17週
06/14  Computer Aided Drug Design II 
第18週
06/21  Final Exam